J5_8OIQ_004
3D structure
- PDB id
- 8OIQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 39S mammalian mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCAGAAAAAA*UACC*GUUG*CUAAU*AAGCAAUAAUG
- Length
- 34 nucleotides
- Bulged bases
- 8OIQ|1|B8|A|205, 8OIQ|1|B8|G|626, 8OIQ|1|B8|U|633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OIQ|1|B8|C|201
8OIQ|1|B8|C|202
8OIQ|1|B8|A|203
8OIQ|1|B8|G|204
8OIQ|1|B8|A|205
8OIQ|1|B8|A|206
8OIQ|1|B8|A|207
8OIQ|1|B8|A|208
8OIQ|1|B8|A|209
8OIQ|1|B8|A|210
*
8OIQ|1|B8|U|236
8OIQ|1|B8|A|237
8OIQ|1|B8|C|238
8OIQ|1|B8|C|239
*
8OIQ|1|B8|G|356
8OIQ|1|B8|U|357
8OIQ|1|B8|U|358
8OIQ|1|B8|G|359
*
8OIQ|1|B8|C|605
8OIQ|1|B8|U|606
8OIQ|1|B8|A|607
8OIQ|1|B8|A|608
8OIQ|1|B8|U|609
*
8OIQ|1|B8|A|624
8OIQ|1|B8|A|625
8OIQ|1|B8|G|626
8OIQ|1|B8|C|627
8OIQ|1|B8|A|628
8OIQ|1|B8|A|629
8OIQ|1|B8|U|630
8OIQ|1|B8|A|631
8OIQ|1|B8|A|632
8OIQ|1|B8|U|633
8OIQ|1|B8|G|634
Current chains
- Chain B8
- 16S rRNA
Nearby chains
- Chain BK
- 39S ribosomal protein L35, mitochondrial
- Chain BN
- Mitochondrial ribosomal protein L4
- Chain BT
- 39S ribosomal protein L15, mitochondrial
- Chain BY
- Mitochondrial ribosomal protein L20
- Chain BZ
- Mitochondrial ribosomal protein L21
- Chain Bs
- 39S ribosomal protein L43, mitochondrial isoform X2
- Chain Bt
- mL44
- Chain Bx
- 39S ribosomal protein L49, mitochondrial
- Chain Bz
- Mitochondrial ribosomal protein L51
Coloring options: