J5_8OLW_002

3D structure

PDB id

8OLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron before the first step of splicing in the presence of K+, Ca2+ and intronistat B

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

UAUAG*CGAA*UUAG*CAAAC*GGAAA

Length

23 nucleotides

Bulged bases

8OLW|1|A|A|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OLW|1|A|U|24
8OLW|1|A|A|25
8OLW|1|A|U|26
8OLW|1|A|A|27
8OLW|1|A|G|28
*
8OLW|1|A|C|40
8OLW|1|A|G|41
8OLW|1|A|A|42
8OLW|1|A|A|43
*
8OLW|1|A|U|65
8OLW|1|A|U|66
8OLW|1|A|A|67
8OLW|1|A|G|68
*
8OLW|1|A|C|119
8OLW|1|A|A|120
8OLW|1|A|A|121
8OLW|1|A|A|122
8OLW|1|A|C|123
*
8OLW|1|A|G|243
8OLW|1|A|G|244
8OLW|1|A|A|245
8OLW|1|A|A|246
8OLW|1|A|A|247

Current chains

Chain A

Group IIC intron

Nearby chains