J5_8OM0_001

3D structure

PDB id

8OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+ and intronistat B

Experimental method

X-RAY DIFFRACTION

Resolution

3.61 Å

Loop

Sequence

UAUAG*CGAA*UUAG*CAAAC*GGAAA

Length

23 nucleotides

Bulged bases

8OM0|1|A|A|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OM0|1|A|U|24
8OM0|1|A|A|25
8OM0|1|A|U|26
8OM0|1|A|A|27
8OM0|1|A|G|28
*
8OM0|1|A|C|40
8OM0|1|A|G|41
8OM0|1|A|A|42
8OM0|1|A|A|43
*
8OM0|1|A|U|65
8OM0|1|A|U|66
8OM0|1|A|A|67
8OM0|1|A|G|68
*
8OM0|1|A|C|119
8OM0|1|A|A|120
8OM0|1|A|A|121
8OM0|1|A|A|122
8OM0|1|A|C|123
*
8OM0|1|A|G|243
8OM0|1|A|G|244
8OM0|1|A|A|245
8OM0|1|A|A|246
8OM0|1|A|A|247

Current chains

Chain A

Domains 1-5

Nearby chains