J5_8OO0_004
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUUAGUCGAUC*GGAAG*CACC*GGUCGUAC
- Length
- 34 nucleotides
- Bulged bases
- 8OO0|1|1|U|1506
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OO0|1|1|G|1475
8OO0|1|1|G|1476
8OO0|1|1|U|1477
8OO0|1|1|U|1478
8OO0|1|1|C|1479
*
8OO0|1|1|G|1503
8OO0|1|1|G|1504
8OO0|1|1|U|1505
8OO0|1|1|U|1506
8OO0|1|1|A|1507
8OO0|1|1|G|1508
8OO0|1|1|U|1509
8OO0|1|1|C|1510
8OO0|1|1|G|1511
8OO0|1|1|A|1512
8OO0|1|1|U|1513
8OO0|1|1|C|1514
*
8OO0|1|1|G|1571
8OO0|1|1|G|1572
8OO0|1|1|A|1573
8OO0|1|1|A|1574
8OO0|1|1|G|1575
*
8OO0|1|1|C|1592
8OO0|1|1|A|1593
8OO0|1|1|C|1594
8OO0|1|1|C|1595
*
8OO0|1|1|G|1809
8OO0|1|1|G|1810
8OO0|1|1|U|1811
8OO0|1|1|C|1812
8OO0|1|1|G|1813
8OO0|1|1|U|1814
8OO0|1|1|A|1815
8OO0|1|1|C|1816
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LR
- Ribosomal protein L19
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Lk
- 60S ribosomal protein L38
- Chain Ll
- 60S ribosomal protein L39
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