J5_8OO0_005
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAGGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8OO0|1|1|G|2079, 8OO0|1|1|G|2084
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8OO0_005 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.1281
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8OO0|1|1|G|1886
8OO0|1|1|C|1887
8OO0|1|1|A|1888
8OO0|1|1|A|1889
8OO0|1|1|A|1890
8OO0|1|1|A|1891
8OO0|1|1|U|1892
8OO0|1|1|A|1893
8OO0|1|1|G|1894
*
8OO0|1|1|U|1918
8OO0|1|1|G|1919
*
8OO0|1|1|U|2072
8OO0|1|1|G|2073
*
8OO0|1|1|C|2077
8OO0|1|1|G|2078
8OO0|1|1|G|2079
8OO0|1|1|A|2080
8OO0|1|1|C|2081
8OO0|1|1|A|2082
8OO0|1|1|G|2083
8OO0|1|1|G|2084
8OO0|1|1|G|2085
*
8OO0|1|1|C|2294
8OO0|1|1|A|2295
8OO0|1|1|C|2296
Current chains
- Chain 1
- 28S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LR
- Ribosomal protein L19
- Chain LV
- 60S ribosomal protein l23-like protein
- Chain LW
- 60S ribosomal protein L24
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