Loop J5_8OO0

3D structure

PDB id: 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
Length: 40 nucleotides
Bulged bases: 8OO0|1|1|A|2367, 8OO0|1|1|A|2776, 8OO0|1|1|G|2833, 8OO0|1|1|U|2834, 8OO0|1|1|U|2937, 8OO0|1|1|U|2938
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8OO0|1|1|A|2362
8OO0|1|1|G|2363
8OO0|1|1|A|2364
8OO0|1|1|A|2365
8OO0|1|1|G|2366
8OO0|1|1|A|2367
8OO0|1|1|C|2368
8OO0|1|1|C|2369
*
8OO0|1|1|G|2774
8OO0|1|1|G|2775
8OO0|1|1|A|2776
8OO0|1|1|U|2777
8OO0|1|1|A|2778
8OO0|1|1|A|2779
8OO0|1|1|C|2780
8OO0|1|1|U|2781
8OO0|1|1|G|2782
*
8OO0|1|1|C|2826
8OO0|1|1|U|2827
8OO0|1|1|U|2828
8OO0|1|1|C|2829
8OO0|1|1|G|2830
8OO0|1|1|A|2831
8OO0|1|1|U|2832
8OO0|1|1|G|2833
8OO0|1|1|U|2834
8OO0|1|1|C|2835
*
8OO0|1|1|G|2910
8OO0|1|1|G|2911
8OO0|1|1|U|2912
8OO0|1|1|U|2913
8OO0|1|1|U|2914
8OO0|1|1|A|2915
8OO0|1|1|G|2916
*
8OO0|1|1|U|2934
8OO0|1|1|A|2935
8OO0|1|1|G|2936
8OO0|1|1|U|2937
8OO0|1|1|U|2938
8OO0|1|1|U|2939

Current chains

Chain 1: 28S rRNA

Nearby chains

Chain LA: 60S ribosomal protein L2-like protein
Chain LB: 60S ribosomal protein L3-like protein
Chain LC: 60S ribosomal protein L4-like protein
Chain Lb: 60S ribosomal protein L29

J5_8OO0_006