J5_8OO0_007

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAC*GAAUG*CAAU*AUAG

Length

24 nucleotides

Bulged bases

8OO0|1|2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OO0|1|2|C|31
8OO0|1|2|U|32
8OO0|1|2|U|33
8OO0|1|2|G|34
8OO0|1|2|U|35
*
8OO0|1|2|A|470
8OO0|1|2|A|471
8OO0|1|2|A|472
8OO0|1|2|U|473
8OO0|1|2|A|474
8OO0|1|2|C|475
*
8OO0|1|2|G|507
8OO0|1|2|A|508
8OO0|1|2|A|509
8OO0|1|2|U|510
8OO0|1|2|G|511
*
8OO0|1|2|C|540
8OO0|1|2|A|541
8OO0|1|2|A|542
8OO0|1|2|U|543
*
8OO0|1|2|A|589
8OO0|1|2|U|590
8OO0|1|2|A|591
8OO0|1|2|G|592

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein s9-like protein

Chain SX

40S ribosomal protein s23-like protein

Chain Se

40S ribosomal protein S30