J5_8OO0_010
3D structure
- PDB id
- 8OO0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8OO0|1|4|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8OO0_010 not in the Motif Atlas
- Homologous match to J5_8CRE_001
- Geometric discrepancy: 0.1048
- The information below is about J5_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8OO0|1|1|A|21
8OO0|1|1|G|22
8OO0|1|1|G|23
*
8OO0|1|4|C|35
8OO0|1|4|G|36
8OO0|1|4|A|37
8OO0|1|4|U|38
8OO0|1|4|G|39
8OO0|1|4|A|40
8OO0|1|4|A|41
8OO0|1|4|G|42
*
8OO0|1|4|U|102
8OO0|1|4|G|103
8OO0|1|4|A|104
8OO0|1|4|A|105
8OO0|1|4|C|106
8OO0|1|4|G|107
*
8OO0|1|4|C|115
8OO0|1|4|G|116
*
8OO0|1|4|C|137
8OO0|1|4|A|138
8OO0|1|4|U|139
Current chains
- Chain 1
- 28S rRNA
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain LN
- Ribosomal protein L15
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
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