J5_8OO0_011

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUG*CGAAUGGC*GAA*UACAU*AAGGCAG

Length

27 nucleotides

Bulged bases

8OO0|1|2|A|92, 8OO0|1|2|C|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OO0|1|2|C|54
8OO0|1|2|A|55
8OO0|1|2|U|56
8OO0|1|2|G|57
*
8OO0|1|2|C|89
8OO0|1|2|G|90
8OO0|1|2|A|91
8OO0|1|2|A|92
8OO0|1|2|U|93
8OO0|1|2|G|94
8OO0|1|2|G|95
8OO0|1|2|C|96
*
8OO0|1|2|G|383
8OO0|1|2|A|384
8OO0|1|2|A|385
*
8OO0|1|2|U|406
8OO0|1|2|A|407
8OO0|1|2|C|408
8OO0|1|2|A|409
8OO0|1|2|U|410
*
8OO0|1|2|A|417
8OO0|1|2|A|418
8OO0|1|2|G|419
8OO0|1|2|G|420
8OO0|1|2|C|421
8OO0|1|2|A|422
8OO0|1|2|G|423

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LV

60S ribosomal protein l23-like protein

Chain SE

40S ribosomal protein S4

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8

Chain SY

40S ribosomal protein S24