J5_8OO0_012

3D structure

PDB id

8OO0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum Methionine Aminopeptidase 2 autoproteolysis product at the 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACCUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

8OO0|1|2|C|635, 8OO0|1|2|U|636, 8OO0|1|2|U|689, 8OO0|1|2|C|691, 8OO0|1|2|C|692, 8OO0|1|2|U|811, 8OO0|1|2|G|813, 8OO0|1|2|A|854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8OO0|1|2|A|633
8OO0|1|2|C|634
8OO0|1|2|C|635
8OO0|1|2|U|636
8OO0|1|2|U|637
8OO0|1|2|G|638
*
8OO0|1|2|U|688
8OO0|1|2|U|689
8OO0|1|2|U|690
8OO0|1|2|C|691
8OO0|1|2|C|692
8OO0|1|2|U|693
*
8OO0|1|2|A|739
8OO0|1|2|C|740
8OO0|1|2|U|741
8OO0|1|2|U|742
8OO0|1|2|U|743
*
8OO0|1|2|A|805
8OO0|1|2|U|806
8OO0|1|2|A|807
8OO0|1|2|G|808
8OO0|1|2|A|809
8OO0|1|2|A|810
8OO0|1|2|U|811
8OO0|1|2|A|812
8OO0|1|2|G|813
8OO0|1|2|G|814
8OO0|1|2|A|815
*
8OO0|1|2|U|852
8OO0|1|2|A|853
8OO0|1|2|A|854
8OO0|1|2|U|855
8OO0|1|2|G|856
8OO0|1|2|A|857
8OO0|1|2|U|858

Current chains

Chain 2

18S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain SE

40S ribosomal protein S4

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11-like protein

Chain SN

40S ribosomal protein S13-like protein

Chain SW

40S ribosomal protein S22-like protein