J5_8P03_004

3D structure

PDB id

8P03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with m6A mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AUCUUGU*GCCCCUUG*CGUU*AUGGAAUAGGAC*GCCAUGAU

Length

39 nucleotides

Bulged bases

8P03|1|2|U|678, 8P03|1|2|U|739, 8P03|1|2|G|794, 8P03|1|2|A|865, 8P03|1|2|U|867, 8P03|1|2|A|909

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P03|1|2|A|675
8P03|1|2|U|676
8P03|1|2|C|677
8P03|1|2|U|678
8P03|1|2|U|679
8P03|1|2|G|680
8P03|1|2|U|681
*
8P03|1|2|G|733
8P03|1|2|C|734
8P03|1|2|C|735
8P03|1|2|C|736
8P03|1|2|C|737
8P03|1|2|U|738
8P03|1|2|U|739
8P03|1|2|G|740
*
8P03|1|2|C|793
8P03|1|2|G|794
8P03|1|2|U|795
8P03|1|2|U|796
*
8P03|1|2|A|861
8P03|1|2|U|862
8P03|1|2|G|863
8P03|1|2|G|864
8P03|1|2|A|865
8P03|1|2|A|866
8P03|1|2|U|867
8P03|1|2|A|868
8P03|1|2|G|869
8P03|1|2|G|870
8P03|1|2|A|871
8P03|1|2|C|872
*
8P03|1|2|G|906
8P03|1|2|C|907
8P03|1|2|C|908
8P03|1|2|A|909
8P03|1|2|U|910
8P03|1|2|G|911
8P03|1|2|A|912
8P03|1|2|U|913

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

ribosomal protein eS7

Chain N

40S ribosomal protein S11

Chain P

ribosomal protein uS15

Chain Y

Ribosomal protein S15a

Chain Z

40S ribosomal protein S23