J5_8P09_004

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUCUUGU*GCCCCUUG*CGUU*AUGGAAUAG*UGAU

Length

32 nucleotides

Bulged bases

8P09|1|2|U|739, 8P09|1|2|U|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P09|1|2|A|675
8P09|1|2|U|676
8P09|1|2|C|677
8P09|1|2|U|678
8P09|1|2|U|679
8P09|1|2|G|680
8P09|1|2|U|681
*
8P09|1|2|G|733
8P09|1|2|C|734
8P09|1|2|C|735
8P09|1|2|C|736
8P09|1|2|C|737
8P09|1|2|U|738
8P09|1|2|U|739
8P09|1|2|G|740
*
8P09|1|2|C|793
8P09|1|2|G|794
8P09|1|2|U|795
8P09|1|2|U|796
*
8P09|1|2|A|861
8P09|1|2|U|862
8P09|1|2|G|863
8P09|1|2|G|864
8P09|1|2|A|865
8P09|1|2|A|866
8P09|1|2|U|867
8P09|1|2|A|868
8P09|1|2|G|869
*
8P09|1|2|U|910
8P09|1|2|G|911
8P09|1|2|A|912
8P09|1|2|U|913

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

ribosomal protein eS7

Chain N

40S ribosomal protein S11

Chain P

ribosomal protein uS15

Chain Y

Ribosomal protein S15a

Chain Z

40S ribosomal protein S23