J5_8P17_001

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8P17|1|1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8P17_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0528

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8P17|1|1|C|47
8P17|1|1|G|48
8P17|1|1|A|49
8P17|1|1|U|50
8P17|1|1|G|51
8P17|1|1|A|52
8P17|1|1|A|53
8P17|1|1|G|54
*
8P17|1|1|C|116
8P17|1|1|G|117
8P17|1|1|A|118
8P17|1|1|A|119
8P17|1|1|U|120
8P17|1|1|G|121
*
8P17|1|1|C|130
8P17|1|1|A|131
*
8P17|1|1|U|148
8P17|1|1|A|149
8P17|1|1|U|150
*
8P17|1|1|A|176
8P17|1|1|G|177
8P17|1|1|G|178

Current chains

Chain 1

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34