J5_8P18_008

3D structure

PDB id

8P18 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8P18_008 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0496

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

8P18|1|2|C|36
8P18|1|2|U|37
8P18|1|2|G|38
8P18|1|2|G|39
*
8P18|1|2|C|403
8P18|1|2|G|404
8P18|1|2|U|405
8P18|1|2|G|406
*
8P18|1|2|C|436
8P18|1|2|U|437
8P18|1|2|U|438
8P18|1|2|U|439
8P18|1|2|C|440
8P18|1|2|A|441
8P18|1|2|G|442
*
8P18|1|2|C|492
8P18|1|2|A|493
8P18|1|2|G|494
8P18|1|2|A|495
8P18|1|2|A|496
8P18|1|2|G|497
8P18|1|2|A|498
8P18|1|2|A|499
8P18|1|2|G|500
*
8P18|1|2|C|545
8P18|1|2|A|546
8P18|1|2|A|547
8P18|1|2|G|548

Current chains

Chain 2

16S rRNA

Nearby chains

Chain i

Small ribosomal subunit protein uS4

Chain q

Small ribosomal subunit protein uS12