J5_8P2F_001

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

8P2F|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8P2F_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0775

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8P2F|1|A|C|47
8P2F|1|A|G|48
8P2F|1|A|A|49
8P2F|1|A|U|50
8P2F|1|A|G|51
8P2F|1|A|A|52
8P2F|1|A|A|53
8P2F|1|A|G|54
*
8P2F|1|A|C|115
8P2F|1|A|G|116
8P2F|1|A|A|117
8P2F|1|A|A|118
8P2F|1|A|U|119
8P2F|1|A|G|120
*
8P2F|1|A|C|129
8P2F|1|A|A|130
*
8P2F|1|A|U|149
8P2F|1|A|A|150
8P2F|1|A|U|151
*
8P2F|1|A|A|178
8P2F|1|A|A|179
8P2F|1|A|G|180

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34