J5_8P2F_002

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CCAAAC*GGGUUGUA*UGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

8P2F|1|A|U|301, 8P2F|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2F|1|A|C|271
8P2F|1|A|C|272
8P2F|1|A|A|273
8P2F|1|A|A|274
8P2F|1|A|A|275
8P2F|1|A|C|276
*
8P2F|1|A|G|295
8P2F|1|A|G|296
8P2F|1|A|G|297
8P2F|1|A|U|298
8P2F|1|A|U|299
8P2F|1|A|G|300
8P2F|1|A|U|301
8P2F|1|A|A|302
*
8P2F|1|A|U|415
8P2F|1|A|G|416
8P2F|1|A|A|417
8P2F|1|A|G|418
8P2F|1|A|U|419
8P2F|1|A|A|420
8P2F|1|A|C|421
*
8P2F|1|A|G|445
8P2F|1|A|G|446
8P2F|1|A|A|447
8P2F|1|A|A|448
8P2F|1|A|U|449
8P2F|1|A|C|450
8P2F|1|A|U|451
8P2F|1|A|G|452
*
8P2F|1|A|U|467
8P2F|1|A|A|468
8P2F|1|A|A|469
8P2F|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L28