J5_8P2F_008

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUGG*CGUG*CUGUUA*UCAGAAAG*CAAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2F|1|a|C|37
8P2F|1|a|U|38
8P2F|1|a|G|39
8P2F|1|a|G|40
*
8P2F|1|a|C|411
8P2F|1|a|G|412
8P2F|1|a|U|413
8P2F|1|a|G|414
*
8P2F|1|a|C|444
8P2F|1|a|U|445
8P2F|1|a|G|446
8P2F|1|a|U|447
8P2F|1|a|U|448
8P2F|1|a|A|449
*
8P2F|1|a|U|501
8P2F|1|a|C|502
8P2F|1|a|A|503
8P2F|1|a|G|504
8P2F|1|a|A|505
8P2F|1|a|A|506
8P2F|1|a|A|507
8P2F|1|a|G|508
*
8P2F|1|a|C|553
8P2F|1|a|A|554
8P2F|1|a|A|555
8P2F|1|a|G|556

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain m

30S ribosomal protein S12