J5_8P2K_004

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

8P2K|1|A2|G|126, 8P2K|1|A2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2K|1|A2|G|123
8P2K|1|A2|U|124
8P2K|1|A2|C|125
8P2K|1|A2|G|126
8P2K|1|A2|C|127
8P2K|1|A2|U|128
8P2K|1|A2|C|129
*
8P2K|1|A2|G|183
8P2K|1|A2|G|184
8P2K|1|A2|G|185
*
8P2K|1|A2|U|214
8P2K|1|A2|G|215
*
8P2K|1|A2|C|311
8P2K|1|A2|C|312
8P2K|1|A2|G|313
*
8P2K|1|A2|C|338
8P2K|1|A2|G|339
8P2K|1|A2|A|340
8P2K|1|A2|C|341
8P2K|1|A2|C|342

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8