J5_8P85_007
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUGU*AAAUAACGAUA*UAAUUGGAAUGAG*CGAGGAACAAU*AUAG
- Length
- 44 nucleotides
- Bulged bases
- 8P85|1|A|A|506, 8P85|1|A|A|538, 8P85|1|A|A|541, 8P85|1|A|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8P85|1|A|C|31
8P85|1|A|U|32
8P85|1|A|U|33
8P85|1|A|G|34
8P85|1|A|U|35
*
8P85|1|A|A|473
8P85|1|A|A|474
8P85|1|A|A|475
8P85|1|A|U|476
8P85|1|A|A|477
8P85|1|A|A|478
8P85|1|A|C|479
8P85|1|A|G|480
8P85|1|A|A|481
8P85|1|A|U|482
8P85|1|A|A|483
*
8P85|1|A|U|504
8P85|1|A|A|505
8P85|1|A|A|506
8P85|1|A|U|507
8P85|1|A|U|508
8P85|1|A|G|509
8P85|1|A|G|510
8P85|1|A|A|511
8P85|1|A|A|512
8P85|1|A|U|513
8P85|1|A|G|514
8P85|1|A|A|515
8P85|1|A|G|516
*
8P85|1|A|C|536
8P85|1|A|G|537
8P85|1|A|A|538
8P85|1|A|G|539
8P85|1|A|G|540
8P85|1|A|A|541
8P85|1|A|A|542
8P85|1|A|C|543
8P85|1|A|A|544
8P85|1|A|A|545
8P85|1|A|U|546
*
8P85|1|A|A|592
8P85|1|A|U|593
8P85|1|A|A|594
8P85|1|A|G|595
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain K
- 40S ribosomal protein S9-A
- Chain Y
- 40S ribosomal protein S23-A
- Chain Z
- 40S ribosomal protein S24-A
- Chain f
- 40S ribosomal protein S30-A
Coloring options: