J5_8P85_018

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

8P85|1|sR|U|639, 8P85|1|sR|U|694, 8P85|1|sR|C|696, 8P85|1|sR|U|742, 8P85|1|sR|U|813, 8P85|1|sR|G|815, 8P85|1|sR|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P85|1|sR|A|636
8P85|1|sR|C|637
8P85|1|sR|U|638
8P85|1|sR|U|639
8P85|1|sR|U|640
8P85|1|sR|G|641
*
8P85|1|sR|U|693
8P85|1|sR|U|694
8P85|1|sR|U|695
8P85|1|sR|C|696
8P85|1|sR|C|697
8P85|1|sR|U|698
*
8P85|1|sR|A|740
8P85|1|sR|C|741
8P85|1|sR|U|742
8P85|1|sR|U|743
8P85|1|sR|U|744
*
8P85|1|sR|A|807
8P85|1|sR|U|808
8P85|1|sR|A|809
8P85|1|sR|G|810
8P85|1|sR|A|811
8P85|1|sR|A|812
8P85|1|sR|U|813
8P85|1|sR|A|814
8P85|1|sR|G|815
8P85|1|sR|G|816
8P85|1|sR|A|817
*
8P85|1|sR|U|854
8P85|1|sR|A|855
8P85|1|sR|A|856
8P85|1|sR|U|857
8P85|1|sR|G|858
8P85|1|sR|A|859
8P85|1|sR|U|860

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain c1

40S ribosomal protein S11-A

Chain c3

40S ribosomal protein S13

Chain d2

40S ribosomal protein S22-A

Chain s4

40S ribosomal protein S4-A

Chain s7

40S ribosomal protein S7-A