J5_8P8M_001
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8P8M|1|LD|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8P8M_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0609
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8P8M|1|A|A|20
8P8M|1|A|G|21
8P8M|1|A|G|22
*
8P8M|1|LD|C|35
8P8M|1|LD|G|36
8P8M|1|LD|A|37
8P8M|1|LD|U|38
8P8M|1|LD|G|39
8P8M|1|LD|A|40
8P8M|1|LD|A|41
8P8M|1|LD|G|42
*
8P8M|1|LD|U|102
8P8M|1|LD|G|103
8P8M|1|LD|A|104
8P8M|1|LD|A|105
8P8M|1|LD|C|106
8P8M|1|LD|G|107
*
8P8M|1|LD|C|115
8P8M|1|LD|G|116
*
8P8M|1|LD|C|137
8P8M|1|LD|A|138
8P8M|1|LD|U|139
Current chains
- Chain A
- 25S rRNA
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain JV
- 60S ribosomal protein L15-A
- Chain QX
- 60S ribosomal protein L25
- Chain RH
- 60S ribosomal protein L35-A
- Chain RJ
- 60S ribosomal protein L37-A
Coloring options: