J5_8P8M_004
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8P8M|1|A|G|2116, 8P8M|1|A|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8P8M_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.0717
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
8P8M|1|A|G|1906
8P8M|1|A|C|1907
8P8M|1|A|A|1908
8P8M|1|A|A|1909
8P8M|1|A|A|1910
8P8M|1|A|A|1911
8P8M|1|A|U|1912
8P8M|1|A|A|1913
8P8M|1|A|G|1914
*
8P8M|1|A|U|1938
8P8M|1|A|G|1939
*
8P8M|1|A|U|2109
8P8M|1|A|G|2110
*
8P8M|1|A|C|2114
8P8M|1|A|G|2115
8P8M|1|A|G|2116
8P8M|1|A|A|2117
8P8M|1|A|C|2118
8P8M|1|A|A|2119
8P8M|1|A|A|2120
8P8M|1|A|G|2121
8P8M|1|A|G|2122
*
8P8M|1|A|C|2331
8P8M|1|A|A|2332
8P8M|1|A|C|2333
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L3
- Chain QQ
- 60S ribosomal protein L19-A
- Chain QV
- 60S ribosomal protein L23-A
- Chain QW
- 60S ribosomal protein L24-A
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