J5_8P8M_005
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8P8M|1|A|A|2817, 8P8M|1|A|U|2873, 8P8M|1|A|G|2874, 8P8M|1|A|U|2978, 8P8M|1|A|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8P8M|1|A|A|2399
8P8M|1|A|G|2400
8P8M|1|A|A|2401
8P8M|1|A|A|2402
8P8M|1|A|G|2403
8P8M|1|A|A|2404
8P8M|1|A|C|2405
8P8M|1|A|C|2406
*
8P8M|1|A|G|2815
8P8M|1|A|G|2816
8P8M|1|A|A|2817
8P8M|1|A|U|2818
8P8M|1|A|A|2819
8P8M|1|A|A|2820
8P8M|1|A|C|2821
8P8M|1|A|U|2822
8P8M|1|A|G|2823
*
8P8M|1|A|C|2867
8P8M|1|A|U|2868
8P8M|1|A|U|2869
8P8M|1|A|C|2870
8P8M|1|A|G|2871
8P8M|1|A|A|2872
8P8M|1|A|U|2873
8P8M|1|A|G|2874
8P8M|1|A|U|2875
8P8M|1|A|C|2876
*
8P8M|1|A|G|2951
8P8M|1|A|G|2952
8P8M|1|A|U|2953
8P8M|1|A|U|2954
8P8M|1|A|U|2955
8P8M|1|A|A|2956
8P8M|1|A|G|2957
*
8P8M|1|A|U|2975
8P8M|1|A|A|2976
8P8M|1|A|G|2977
8P8M|1|A|U|2978
8P8M|1|A|U|2979
8P8M|1|A|U|2980
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L2-A
- Chain LG
- 60S ribosomal protein L3
- Chain LH
- 60S ribosomal protein L4-A
- Chain RB
- 60S ribosomal protein L29
Coloring options: