J5_8P8N_006
3D structure
- PDB id
- 8P8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8P8N|1|A|G|2418, 8P8N|1|A|A|2799, 8P8N|1|A|G|2800, 8P8N|1|A|A|2801, 8P8N|1|A|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8P8N_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.0636
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8P8N|1|A|U|2416
8P8N|1|A|U|2417
8P8N|1|A|G|2418
8P8N|1|A|A|2419
*
8P8N|1|A|U|2611
8P8N|1|A|U|2612
8P8N|1|A|U|2613
8P8N|1|A|G|2614
*
8P8N|1|A|C|2627
8P8N|1|A|A|2628
*
8P8N|1|A|U|2650
8P8N|1|A|G|2651
*
8P8N|1|A|C|2798
8P8N|1|A|A|2799
8P8N|1|A|G|2800
8P8N|1|A|A|2801
8P8N|1|A|A|2802
8P8N|1|A|A|2803
8P8N|1|A|A|2804
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JV
- 60S ribosomal protein L15-A
- Chain LF
- 60S ribosomal protein L2-A
- Chain QP
- 60S ribosomal protein L18-A
- Chain QT
- 60S ribosomal protein L21-A
- Chain RA
- 60S ribosomal protein L28
- Chain RB
- 60S ribosomal protein L29
- Chain RQ
- 60S ribosomal protein L42-A
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