J5_8PFR_002
3D structure
- PDB id
- 8PFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8PFR|1|A|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8PFR_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0554
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8PFR|1|A|G|658
8PFR|1|A|G|659
8PFR|1|A|A|660
8PFR|1|A|G|661
8PFR|1|A|U|662
8PFR|1|A|C|663
*
8PFR|1|A|G|799
8PFR|1|A|G|800
8PFR|1|A|A|801
8PFR|1|A|C|802
*
8PFR|1|A|G|941
8PFR|1|A|U|942
8PFR|1|A|U|943
8PFR|1|A|C|944
*
8PFR|1|A|G|1375
8PFR|1|A|C|1376
*
8PFR|1|A|G|1431
8PFR|1|A|C|1432
8PFR|1|A|A|1433
8PFR|1|A|G|1434
8PFR|1|A|A|1435
8PFR|1|A|U|1436
8PFR|1|A|C|1437
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JT
- 60S ribosomal protein L13-A
- Chain JV
- 60S ribosomal protein L15-A
- Chain LD
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LH
- 60S ribosomal protein L4-A
- Chain RA
- 60S ribosomal protein L28
- Chain RE
- 60S ribosomal protein L32
Coloring options: