J5_8PHJ_004

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8PHJ|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8PHJ_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0529

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8PHJ|1|a|C|47
8PHJ|1|a|G|48
8PHJ|1|a|A|49
8PHJ|1|a|U|50
8PHJ|1|a|G|51
8PHJ|1|a|A|52
8PHJ|1|a|A|53
8PHJ|1|a|G|54
*
8PHJ|1|a|C|116
8PHJ|1|a|G|117
8PHJ|1|a|A|118
8PHJ|1|a|A|119
8PHJ|1|a|U|120
8PHJ|1|a|G|121
*
8PHJ|1|a|C|130
8PHJ|1|a|A|131
*
8PHJ|1|a|U|148
8PHJ|1|a|A|149
8PHJ|1|a|U|150
*
8PHJ|1|a|A|176
8PHJ|1|a|G|177
8PHJ|1|a|G|178

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 1

Large ribosomal subunit protein bL34