3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
Length
37 nucleotides
Bulged bases
8PHJ|1|a|A|2062, 8PHJ|1|a|A|2448, 8PHJ|1|a|H2U|2449, 8PHJ|1|a|U|2585, 8PHJ|1|a|U|2609
QA status
Modified nucleotides: H2U, 2MA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8PHJ|1|a|G|2057
8PHJ|1|a|A|2058
8PHJ|1|a|A|2059
8PHJ|1|a|A|2060
8PHJ|1|a|G|2061
8PHJ|1|a|A|2062
8PHJ|1|a|C|2063
8PHJ|1|a|C|2064
*
8PHJ|1|a|G|2446
8PHJ|1|a|G|2447
8PHJ|1|a|A|2448
8PHJ|1|a|H2U|2449
8PHJ|1|a|A|2450
8PHJ|1|a|A|2451
8PHJ|1|a|C|2452
8PHJ|1|a|A|2453
*
8PHJ|1|a|U|2500
8PHJ|1|a|C|2501
8PHJ|1|a|G|2502
8PHJ|1|a|2MA|2503
8PHJ|1|a|PSU|2504
8PHJ|1|a|G|2505
8PHJ|1|a|U|2506
8PHJ|1|a|C|2507
*
8PHJ|1|a|G|2582
8PHJ|1|a|G|2583
8PHJ|1|a|U|2584
8PHJ|1|a|U|2585
8PHJ|1|a|U|2586
8PHJ|1|a|A|2587
8PHJ|1|a|G|2588
*
8PHJ|1|a|C|2606
8PHJ|1|a|G|2607
8PHJ|1|a|G|2608
8PHJ|1|a|U|2609
8PHJ|1|a|C|2610
8PHJ|1|a|C|2611

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

Chain 7
Transfer RNA; tRNA
Chain c
Large ribosomal subunit protein uL2
Chain d
Large ribosomal subunit protein uL3
Chain e
Large ribosomal subunit protein uL4
Chain k
Large ribosomal subunit protein uL15
Chain l
Large ribosomal subunit protein uL16
Chain r
Large ribosomal subunit protein uL22
Chain z
Large ribosomal subunit protein bL32

Coloring options:

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