J5_8PJ1_002
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUA(OMG)
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PJ1|1|A|C|30
8PJ1|1|A|U|31
8PJ1|1|A|U|32
8PJ1|1|A|G|33
8PJ1|1|A|U|34
*
8PJ1|1|A|A|521
8PJ1|1|A|A|522
8PJ1|1|A|A|523
8PJ1|1|A|U|524
8PJ1|1|A|A|525
8PJ1|1|A|A|526
8PJ1|1|A|C|527
*
8PJ1|1|A|G|558
8PJ1|1|A|G|559
8PJ1|1|A|A|560
8PJ1|1|A|A|561
8PJ1|1|A|U|562
8PJ1|1|A|G|563
8PJ1|1|A|A|564
8PJ1|1|A|G|565
*
8PJ1|1|A|C|585
8PJ1|1|A|G|586
8PJ1|1|A|A|587
8PJ1|1|A|G|588
8PJ1|1|A|G|589
8PJ1|1|A|A|590
8PJ1|1|A|U|591
8PJ1|1|A|C|592
8PJ1|1|A|C|593
8PJ1|1|A|A|594
8PJ1|1|A|U|595
*
8PJ1|1|A|A|641
8PJ1|1|A|U|642
8PJ1|1|A|A|643
8PJ1|1|A|OMG|644
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 1
- Eukaryotic translation initiation factor 3 subunit B
- Chain D
- 40S ribosomal protein S9
- Chain E
- 40S ribosomal protein S23
- Chain F
- 40S ribosomal protein S30
Coloring options: