J5_8PJ1_004

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

8PJ1|1|A|G|126, 8PJ1|1|A|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ1|1|A|G|123
8PJ1|1|A|U|124
8PJ1|1|A|C|125
8PJ1|1|A|G|126
8PJ1|1|A|C|127
8PJ1|1|A|U|128
8PJ1|1|A|C|129
*
8PJ1|1|A|G|183
8PJ1|1|A|G|184
8PJ1|1|A|G|185
*
8PJ1|1|A|U|214
8PJ1|1|A|G|215
*
8PJ1|1|A|C|310
8PJ1|1|A|C|311
8PJ1|1|A|G|312
*
8PJ1|1|A|C|337
8PJ1|1|A|G|338
8PJ1|1|A|A|339
8PJ1|1|A|C|340
8PJ1|1|A|C|341

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S4, X isoform

Chain R

40S ribosomal protein S8

Chain S

40S ribosomal protein S6