J5_8PJ4_004

3D structure

PDB id

8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF5 release (48S-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

8PJ4|1|A|G|126, 8PJ4|1|A|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ4|1|A|G|123
8PJ4|1|A|U|124
8PJ4|1|A|C|125
8PJ4|1|A|G|126
8PJ4|1|A|C|127
8PJ4|1|A|U|128
8PJ4|1|A|C|129
*
8PJ4|1|A|G|183
8PJ4|1|A|G|184
8PJ4|1|A|G|185
*
8PJ4|1|A|U|214
8PJ4|1|A|G|215
*
8PJ4|1|A|C|310
8PJ4|1|A|C|311
8PJ4|1|A|G|312
*
8PJ4|1|A|C|337
8PJ4|1|A|G|338
8PJ4|1|A|A|339
8PJ4|1|A|C|340
8PJ4|1|A|C|341

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S4, X isoform

Chain R

40S ribosomal protein S8

Chain S

40S ribosomal protein S6