J5_8PNN_010
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8PNN|1|AR|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8PNN_010 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0337
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8PNN|1|AR|G|658
8PNN|1|AR|G|659
8PNN|1|AR|A|660
8PNN|1|AR|G|661
8PNN|1|AR|U|662
8PNN|1|AR|C|663
*
8PNN|1|AR|G|799
8PNN|1|AR|G|800
8PNN|1|AR|A|801
8PNN|1|AR|C|802
*
8PNN|1|AR|G|941
8PNN|1|AR|U|942
8PNN|1|AR|U|943
8PNN|1|AR|C|944
*
8PNN|1|AR|G|1375
8PNN|1|AR|C|1376
*
8PNN|1|AR|G|1431
8PNN|1|AR|C|1432
8PNN|1|AR|A|1433
8PNN|1|AR|G|1434
8PNN|1|AR|A|1435
8PNN|1|AR|U|1436
8PNN|1|AR|C|1437
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain AT
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CF
- 60S ribosomal protein L4-A
- Chain CN
- 60S ribosomal protein L13-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain DC
- 60S ribosomal protein L28
- Chain DG
- 60S ribosomal protein L32
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