J5_8PNN_013

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU

Length

38 nucleotides

Bulged bases

8PNN|1|AR|A|2404, 8PNN|1|AR|A|2817, 8PNN|1|AR|U|2873, 8PNN|1|AR|G|2874, 8PNN|1|AR|U|2954, 8PNN|1|AR|U|2978, 8PNN|1|AR|U|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PNN|1|AR|A|2399
8PNN|1|AR|G|2400
8PNN|1|AR|A|2401
8PNN|1|AR|A|2402
8PNN|1|AR|G|2403
8PNN|1|AR|A|2404
8PNN|1|AR|C|2405
8PNN|1|AR|C|2406
*
8PNN|1|AR|G|2815
8PNN|1|AR|G|2816
8PNN|1|AR|A|2817
8PNN|1|AR|U|2818
8PNN|1|AR|A|2819
8PNN|1|AR|A|2820
8PNN|1|AR|C|2821
8PNN|1|AR|U|2822
8PNN|1|AR|G|2823
*
8PNN|1|AR|C|2867
8PNN|1|AR|U|2868
8PNN|1|AR|U|2869
8PNN|1|AR|C|2870
8PNN|1|AR|G|2871
8PNN|1|AR|A|2872
8PNN|1|AR|U|2873
8PNN|1|AR|G|2874
8PNN|1|AR|U|2875
*
8PNN|1|AR|G|2952
8PNN|1|AR|U|2953
8PNN|1|AR|U|2954
8PNN|1|AR|U|2955
8PNN|1|AR|A|2956
8PNN|1|AR|G|2957
*
8PNN|1|AR|U|2975
8PNN|1|AR|A|2976
8PNN|1|AR|G|2977
8PNN|1|AR|U|2978
8PNN|1|AR|U|2979
8PNN|1|AR|U|2980

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain CE

60S ribosomal protein L3

Chain CF

60S ribosomal protein L4-A

Chain CR

60S ribosomal protein L17-A

Chain DC

60S ribosomal protein L28

Chain DD

60S ribosomal protein L29