J5_8PNN_015

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

8PNN|1|sR|A|541, 8PNN|1|sR|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PNN|1|sR|C|31
8PNN|1|sR|U|32
8PNN|1|sR|U|33
8PNN|1|sR|G|34
8PNN|1|sR|U|35
*
8PNN|1|sR|A|473
8PNN|1|sR|A|474
8PNN|1|sR|A|475
8PNN|1|sR|U|476
8PNN|1|sR|A|477
8PNN|1|sR|A|478
8PNN|1|sR|C|479
*
8PNN|1|sR|G|509
8PNN|1|sR|G|510
8PNN|1|sR|A|511
8PNN|1|sR|A|512
8PNN|1|sR|U|513
8PNN|1|sR|G|514
8PNN|1|sR|A|515
8PNN|1|sR|G|516
*
8PNN|1|sR|C|536
8PNN|1|sR|G|537
8PNN|1|sR|A|538
8PNN|1|sR|G|539
8PNN|1|sR|G|540
8PNN|1|sR|A|541
8PNN|1|sR|A|542
8PNN|1|sR|C|543
8PNN|1|sR|A|544
8PNN|1|sR|A|545
8PNN|1|sR|U|546
*
8PNN|1|sR|A|592
8PNN|1|sR|U|593
8PNN|1|sR|A|594
8PNN|1|sR|G|595

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A