J5_8PNN_016
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8PNN|1|sR|A|93, 8PNN|1|sR|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8PNN_016 not in the Motif Atlas
- Homologous match to J5_8P9A_017
- Geometric discrepancy: 0.0424
- The information below is about J5_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8PNN|1|sR|C|54
8PNN|1|sR|A|55
8PNN|1|sR|U|56
8PNN|1|sR|G|57
*
8PNN|1|sR|C|90
8PNN|1|sR|G|91
8PNN|1|sR|A|92
8PNN|1|sR|A|93
8PNN|1|sR|U|94
8PNN|1|sR|G|95
8PNN|1|sR|G|96
8PNN|1|sR|C|97
*
8PNN|1|sR|G|386
8PNN|1|sR|A|387
8PNN|1|sR|G|388
*
8PNN|1|sR|C|409
8PNN|1|sR|A|410
8PNN|1|sR|C|411
*
8PNN|1|sR|G|422
8PNN|1|sR|G|423
8PNN|1|sR|C|424
8PNN|1|sR|A|425
8PNN|1|sR|G|426
Current chains
- Chain sR
- 16S ribosomal RNA
Nearby chains
- Chain CX
- 60S ribosomal protein L23-A
- Chain CY
- 60S ribosomal protein L24-A
- Chain d4
- 40S ribosomal protein S24-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s6
- 40S ribosomal protein S6-A
- Chain s8
- 40S ribosomal protein S8-A
- Chain s9
- 40S ribosomal protein S9-A
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