J5_8PNN_017

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

8PNN|1|sR|U|639, 8PNN|1|sR|U|694, 8PNN|1|sR|C|696, 8PNN|1|sR|U|742, 8PNN|1|sR|U|813, 8PNN|1|sR|G|815, 8PNN|1|sR|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PNN|1|sR|A|636
8PNN|1|sR|C|637
8PNN|1|sR|U|638
8PNN|1|sR|U|639
8PNN|1|sR|U|640
8PNN|1|sR|G|641
*
8PNN|1|sR|U|693
8PNN|1|sR|U|694
8PNN|1|sR|U|695
8PNN|1|sR|C|696
8PNN|1|sR|C|697
8PNN|1|sR|U|698
*
8PNN|1|sR|A|740
8PNN|1|sR|C|741
8PNN|1|sR|U|742
8PNN|1|sR|U|743
8PNN|1|sR|U|744
*
8PNN|1|sR|A|807
8PNN|1|sR|U|808
8PNN|1|sR|A|809
8PNN|1|sR|G|810
8PNN|1|sR|A|811
8PNN|1|sR|A|812
8PNN|1|sR|U|813
8PNN|1|sR|A|814
8PNN|1|sR|G|815
8PNN|1|sR|G|816
8PNN|1|sR|A|817
*
8PNN|1|sR|U|854
8PNN|1|sR|A|855
8PNN|1|sR|A|856
8PNN|1|sR|U|857
8PNN|1|sR|G|858
8PNN|1|sR|A|859
8PNN|1|sR|U|860

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain c1

40S ribosomal protein S11-A

Chain c3

40S ribosomal protein S13

Chain d2

40S ribosomal protein S22-A

Chain s4

40S ribosomal protein S4-A

Chain s7

40S ribosomal protein S7-A