J5_8POT_001
3D structure
- PDB id
- 8POT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and the benzoxaborole cmpd9 in the editing conformation
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.149 Å
Loop
- Sequence
- AUGG*CAA*UCG*UGUG*CU
- Length
- 16 nucleotides
- Bulged bases
- 8POT|1|B|U|8, 8POT|1|B|G|9, 8POT|1|B|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8POT_001 not in the Motif Atlas
- Homologous match to J5_3ZGZ_001
- Geometric discrepancy: 0.1488
- The information below is about J5_3ZGZ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_21852.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8POT|1|B|A|7
8POT|1|B|U|8
8POT|1|B|G|9
8POT|1|B|G|10
*
8POT|1|B|C|25
8POT|1|B|A|26
8POT|1|B|A|27
*
8POT|1|B|U|43
8POT|1|B|C|44
8POT|1|B|G|45
*
8POT|1|B|U|47|||I
8POT|1|B|G|47|||J
8POT|1|B|U|48
8POT|1|B|G|49
*
8POT|1|B|C|65
8POT|1|B|U|66
Current chains
- Chain B
- tRNA(leu)
Nearby chains
- Chain A
- Leucine--tRNA ligase
Coloring options: