J5_8PPK_004

3D structure

PDB id

8PPK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

8PPK|1|2|G|126, 8PPK|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPK|1|2|G|123
8PPK|1|2|U|124
8PPK|1|2|C|125
8PPK|1|2|G|126
8PPK|1|2|C|127
8PPK|1|2|U|128
8PPK|1|2|C|129
*
8PPK|1|2|G|183
8PPK|1|2|G|184
8PPK|1|2|G|185
*
8PPK|1|2|U|214
8PPK|1|2|G|215
*
8PPK|1|2|C|310
8PPK|1|2|C|311
8PPK|1|2|G|312
*
8PPK|1|2|C|337
8PPK|1|2|G|338
8PPK|1|2|A|339
8PPK|1|2|C|340
8PPK|1|2|C|341

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8