J5_8PPL_001

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUUG(PSU)*AAAUAAC*GGAAUGAG*CGAGG(A2M)UCCAU*AUA(OMG)

Length

35 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPL|1|A2|C|30
8PPL|1|A2|U|31
8PPL|1|A2|U|32
8PPL|1|A2|G|33
8PPL|1|A2|PSU|34
*
8PPL|1|A2|A|521
8PPL|1|A2|A|522
8PPL|1|A2|A|523
8PPL|1|A2|U|524
8PPL|1|A2|A|525
8PPL|1|A2|A|526
8PPL|1|A2|C|527
*
8PPL|1|A2|G|558
8PPL|1|A2|G|559
8PPL|1|A2|A|560
8PPL|1|A2|A|561
8PPL|1|A2|U|562
8PPL|1|A2|G|563
8PPL|1|A2|A|564
8PPL|1|A2|G|565
*
8PPL|1|A2|C|585
8PPL|1|A2|G|586
8PPL|1|A2|A|587
8PPL|1|A2|G|588
8PPL|1|A2|G|589
8PPL|1|A2|A2M|590
8PPL|1|A2|U|591
8PPL|1|A2|C|592
8PPL|1|A2|C|593
8PPL|1|A2|A|594
8PPL|1|A2|U|595
*
8PPL|1|A2|A|641
8PPL|1|A2|U|642
8PPL|1|A2|A|643
8PPL|1|A2|OMG|644

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AJ

40S ribosomal protein S9

Chain AX

40S ribosomal protein S23

Chain Ae

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein