J5_8PPL_003

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUCGCUC*GGG*UG*CCG*CGACC

Length

20 nucleotides

Bulged bases

8PPL|1|A2|G|126, 8PPL|1|A2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPL|1|A2|G|123
8PPL|1|A2|U|124
8PPL|1|A2|C|125
8PPL|1|A2|G|126
8PPL|1|A2|C|127
8PPL|1|A2|U|128
8PPL|1|A2|C|129
*
8PPL|1|A2|G|183
8PPL|1|A2|G|184
8PPL|1|A2|G|185
*
8PPL|1|A2|U|214
8PPL|1|A2|G|215
*
8PPL|1|A2|C|310
8PPL|1|A2|C|311
8PPL|1|A2|G|312
*
8PPL|1|A2|C|337
8PPL|1|A2|G|338
8PPL|1|A2|A|339
8PPL|1|A2|C|340
8PPL|1|A2|C|341

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8