J5_8PV5_002
3D structure
- PDB id
- 8PV5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- (OMG)GAGUC*GGAC*GUUAC*GCC*GCAGAU(OMC)
- Length
- 25 nucleotides
- Bulged bases
- 8PV5|1|C1|U|1419
- QA status
- Modified nucleotides: OMG, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PV5|1|C1|OMG|646
8PV5|1|C1|G|647
8PV5|1|C1|A|648
8PV5|1|C1|G|649
8PV5|1|C1|U|650
8PV5|1|C1|C|651
*
8PV5|1|C1|G|781
8PV5|1|C1|G|782
8PV5|1|C1|A|783
8PV5|1|C1|C|784
*
8PV5|1|C1|G|923
8PV5|1|C1|U|924
8PV5|1|C1|U|925
8PV5|1|C1|A|926
8PV5|1|C1|C|927
*
8PV5|1|C1|G|1357
8PV5|1|C1|C|1358
8PV5|1|C1|C|1359
*
8PV5|1|C1|G|1414
8PV5|1|C1|C|1415
8PV5|1|C1|A|1416
8PV5|1|C1|G|1417
8PV5|1|C1|A|1418
8PV5|1|C1|U|1419
8PV5|1|C1|OMC|1420
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
- Chain Lq
- Putative 60S ribosomal protein
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