J5_8PVK_004
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAGGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8PVK|1|C1|G|2079, 8PVK|1|C1|G|2084
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8PVK_004 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.0934
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PVK|1|C1|G|1886
8PVK|1|C1|C|1887
8PVK|1|C1|A|1888
8PVK|1|C1|A|1889
8PVK|1|C1|A|1890
8PVK|1|C1|A|1891
8PVK|1|C1|U|1892
8PVK|1|C1|A|1893
8PVK|1|C1|G|1894
*
8PVK|1|C1|U|1918
8PVK|1|C1|G|1919
*
8PVK|1|C1|U|2072
8PVK|1|C1|G|2073
*
8PVK|1|C1|C|2077
8PVK|1|C1|G|2078
8PVK|1|C1|G|2079
8PVK|1|C1|A|2080
8PVK|1|C1|C|2081
8PVK|1|C1|A|2082
8PVK|1|C1|G|2083
8PVK|1|C1|G|2084
8PVK|1|C1|G|2085
*
8PVK|1|C1|C|2294
8PVK|1|C1|A|2295
8PVK|1|C1|C|2296
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CQ
- Ribosome biogenesis protein RLP24
- Chain Cb
- Zinc finger domain-containing protein
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LR
- Ribosomal protein L19
- Chain LV
- 60S ribosomal protein l23-like protein
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