J5_8PVK_005
3D structure
- PDB id
- 8PVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- CG*CUAAG*UUGAUU*AC*GG
- Length
- 17 nucleotides
- Bulged bases
- 8PVK|1|C1|U|2614, 8PVK|1|C1|G|2673
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PVK|1|C1|C|2581
8PVK|1|C1|G|2582
*
8PVK|1|C1|C|2613
8PVK|1|C1|U|2614
8PVK|1|C1|A|2615
8PVK|1|C1|A|2616
8PVK|1|C1|G|2617
*
8PVK|1|C1|U|2671
8PVK|1|C1|U|2672
8PVK|1|C1|G|2673
8PVK|1|C1|A|2674
8PVK|1|C1|U|2675
8PVK|1|C1|U|2676
*
8PVK|1|C1|A|2699
8PVK|1|C1|C|2700
*
8PVK|1|C1|G|2712
8PVK|1|C1|G|2713
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain Cd
- Nucleolar GTP-binding protein 2
- Chain Cf
- Ribosome production factor 2 homolog
- Chain Cg
- Ribosome biogenesis regulatory protein
- Chain Cz
- rRNA-processing protein
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LT
- 60S ribosomal protein l21-like protein
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