J5_8PVL_002
3D structure
- PDB id
- 8PVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- A(OMG)GAGUC*GGAC*GUUAC*GCC*GCAGAU(OMC)U
- Length
- 27 nucleotides
- Bulged bases
- 8PVL|1|C1|U|1419
- QA status
- Modified nucleotides: OMG, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PVL|1|C1|A|645
8PVL|1|C1|OMG|646
8PVL|1|C1|G|647
8PVL|1|C1|A|648
8PVL|1|C1|G|649
8PVL|1|C1|U|650
8PVL|1|C1|C|651
*
8PVL|1|C1|G|781
8PVL|1|C1|G|782
8PVL|1|C1|A|783
8PVL|1|C1|C|784
*
8PVL|1|C1|G|923
8PVL|1|C1|U|924
8PVL|1|C1|U|925
8PVL|1|C1|A|926
8PVL|1|C1|C|927
*
8PVL|1|C1|G|1357
8PVL|1|C1|C|1358
8PVL|1|C1|C|1359
*
8PVL|1|C1|G|1414
8PVL|1|C1|C|1415
8PVL|1|C1|A|1416
8PVL|1|C1|G|1417
8PVL|1|C1|A|1418
8PVL|1|C1|U|1419
8PVL|1|C1|OMC|1420
8PVL|1|C1|U|1421
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain LQ
- Ribosomal protein L18-like protein
- Chain La
- 60S ribosomal protein L28-like protein
- Chain Le
- 60S ribosomal protein L32-like protein
- Chain Lq
- Putative 60S ribosomal protein
Coloring options: