J5_8Q4F_002

3D structure

PDB id

8Q4F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of arbekacin bound Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CAG*CUAUC*GAGG

Length

26 nucleotides

Bulged bases

8Q4F|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8Q4F|1|a|C|47
8Q4F|1|a|G|48
8Q4F|1|a|A|49
8Q4F|1|a|U|50
8Q4F|1|a|G|51
8Q4F|1|a|A|52
8Q4F|1|a|A|53
8Q4F|1|a|G|54
*
8Q4F|1|a|C|116
8Q4F|1|a|G|117
8Q4F|1|a|A|118
8Q4F|1|a|A|119
8Q4F|1|a|U|120
8Q4F|1|a|G|121
*
8Q4F|1|a|C|130
8Q4F|1|a|A|131
8Q4F|1|a|G|132
*
8Q4F|1|a|C|147
8Q4F|1|a|U|148
8Q4F|1|a|A|149
8Q4F|1|a|U|150
8Q4F|1|a|C|151
*
8Q4F|1|a|G|175
8Q4F|1|a|A|176
8Q4F|1|a|G|177
8Q4F|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34