J5_8Q5I_005
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8Q5I|1|1|A|2382, 8Q5I|1|1|A|2789, 8Q5I|1|1|U|2845, 8Q5I|1|1|G|2846, 8Q5I|1|1|U|2950, 8Q5I|1|1|U|2951
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Q5I|1|1|A|2377
8Q5I|1|1|G|2378
8Q5I|1|1|A|2379
8Q5I|1|1|A|2380
8Q5I|1|1|G|2381
8Q5I|1|1|A|2382
8Q5I|1|1|C|2383
8Q5I|1|1|C|2384
*
8Q5I|1|1|G|2787
8Q5I|1|1|G|2788
8Q5I|1|1|A|2789
8Q5I|1|1|U|2790
8Q5I|1|1|A|2791
8Q5I|1|1|A|2792
8Q5I|1|1|C|2793
8Q5I|1|1|U|2794
8Q5I|1|1|G|2795
*
8Q5I|1|1|C|2839
8Q5I|1|1|U|2840
8Q5I|1|1|U|2841
8Q5I|1|1|C|2842
8Q5I|1|1|G|2843
8Q5I|1|1|A|2844
8Q5I|1|1|U|2845
8Q5I|1|1|G|2846
8Q5I|1|1|U|2847
8Q5I|1|1|C|2848
*
8Q5I|1|1|G|2923
8Q5I|1|1|G|2924
8Q5I|1|1|U|2925
8Q5I|1|1|U|2926
8Q5I|1|1|U|2927
8Q5I|1|1|A|2928
8Q5I|1|1|G|2929
*
8Q5I|1|1|U|2947
8Q5I|1|1|A|2948
8Q5I|1|1|G|2949
8Q5I|1|1|U|2950
8Q5I|1|1|U|2951
8Q5I|1|1|U|2952
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L28
- Chain AC
- 60S ribosomal protein L29
- Chain j
- 60S ribosomal protein L2-B
- Chain k
- 60S ribosomal protein L3
- Chain l
- 60S ribosomal protein L4-B
Coloring options: