J5_8Q5I_006
3D structure
- PDB id
- 8Q5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with cephaeline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8Q5I|1|1|G|2396, 8Q5I|1|1|A|2771, 8Q5I|1|1|G|2772, 8Q5I|1|1|A|2773, 8Q5I|1|1|A|2774
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8Q5I_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2605
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.2
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8Q5I|1|1|U|2394
8Q5I|1|1|U|2395
8Q5I|1|1|G|2396
8Q5I|1|1|A|2397
*
8Q5I|1|1|U|2583
8Q5I|1|1|U|2584
8Q5I|1|1|U|2585
8Q5I|1|1|G|2586
*
8Q5I|1|1|C|2599
8Q5I|1|1|A|2600
*
8Q5I|1|1|U|2622
8Q5I|1|1|G|2623
*
8Q5I|1|1|C|2770
8Q5I|1|1|A|2771
8Q5I|1|1|G|2772
8Q5I|1|1|A|2773
8Q5I|1|1|A|2774
8Q5I|1|1|A|2775
8Q5I|1|1|A|2776
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 10
- Mixture of endogenous E-tRNAs
- Chain 2
- 60S ribosomal protein L21-A
- Chain AB
- 60S ribosomal protein L28
- Chain AC
- 60S ribosomal protein L29
- Chain AP
- 60S ribosomal protein L42-B
- Chain j
- 60S ribosomal protein L2-B
- Chain v
- 60S ribosomal protein L15-A
- Chain y
- 60S ribosomal protein L18-A
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