J5_8QBT_001

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8QBT|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8QBT_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0321

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8QBT|1|A|C|47
8QBT|1|A|G|48
8QBT|1|A|A|49
8QBT|1|A|U|50
8QBT|1|A|G|51
8QBT|1|A|A|52
8QBT|1|A|A|53
8QBT|1|A|G|54
*
8QBT|1|A|C|116
8QBT|1|A|G|117
8QBT|1|A|A|118
8QBT|1|A|A|119
8QBT|1|A|U|120
8QBT|1|A|G|121
*
8QBT|1|A|C|130
8QBT|1|A|A|131
*
8QBT|1|A|U|148
8QBT|1|A|A|149
8QBT|1|A|U|150
*
8QBT|1|A|A|176
8QBT|1|A|G|177
8QBT|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein bL34