J5_8QBT_005
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 8QBT|1|A|A|2448, 8QBT|1|A|U|2449, 8QBT|1|A|U|2609
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8QBT|1|A|G|2057
8QBT|1|A|A|2058
8QBT|1|A|A|2059
8QBT|1|A|A|2060
8QBT|1|A|G|2061
8QBT|1|A|A|2062
8QBT|1|A|C|2063
8QBT|1|A|C|2064
*
8QBT|1|A|G|2446
8QBT|1|A|G|2447
8QBT|1|A|A|2448
8QBT|1|A|U|2449
8QBT|1|A|A|2450
8QBT|1|A|A|2451
8QBT|1|A|C|2452
8QBT|1|A|A|2453
*
8QBT|1|A|U|2500
8QBT|1|A|C|2501
8QBT|1|A|G|2502
8QBT|1|A|2MA|2503
8QBT|1|A|PSU|2504
8QBT|1|A|G|2505
8QBT|1|A|U|2506
8QBT|1|A|C|2507
*
8QBT|1|A|G|2582
8QBT|1|A|G|2583
8QBT|1|A|U|2584
8QBT|1|A|U|2585
8QBT|1|A|U|2586
8QBT|1|A|A|2587
8QBT|1|A|G|2588
*
8QBT|1|A|C|2606
8QBT|1|A|G|2607
8QBT|1|A|G|2608
8QBT|1|A|U|2609
8QBT|1|A|C|2610
8QBT|1|A|C|2611
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain 6
- Transfer RNA; tRNA
- Chain C
- Large ribosomal subunit protein uL2
- Chain D
- 50S ribosomal protein L3
- Chain E
- Large ribosomal subunit protein uL4
- Chain L
- 50S ribosomal protein L15
- Chain M
- 50S ribosomal protein L16
- Chain S
- Large ribosomal subunit protein uL22
- Chain W
- Large ribosomal subunit protein bL27
- Chain a
- Large ribosomal subunit protein bL32
- Chain f
- ApdP nascent chain
Coloring options: