J5_8QBT_008

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGG*CGUG*CUUUCAGC*GCAGAAGAAG*CAAG

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QBT|1|i|C|36
8QBT|1|i|U|37
8QBT|1|i|G|38
8QBT|1|i|G|39
*
8QBT|1|i|C|403
8QBT|1|i|G|404
8QBT|1|i|U|405
8QBT|1|i|G|406
*
8QBT|1|i|C|436
8QBT|1|i|U|437
8QBT|1|i|U|438
8QBT|1|i|U|439
8QBT|1|i|C|440
8QBT|1|i|A|441
8QBT|1|i|G|442
8QBT|1|i|C|443
*
8QBT|1|i|G|491
8QBT|1|i|C|492
8QBT|1|i|A|493
8QBT|1|i|G|494
8QBT|1|i|A|495
8QBT|1|i|A|496
8QBT|1|i|G|497
8QBT|1|i|A|498
8QBT|1|i|A|499
8QBT|1|i|G|500
*
8QBT|1|i|C|545
8QBT|1|i|A|546
8QBT|1|i|A|547
8QBT|1|i|G|548

Current chains

Chain i

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S12