J5_8QFD_002
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 8QFD|1|5|C|2281, 8QFD|1|5|U|2342
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8QFD_002 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.0674
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8QFD|1|5|G|1327
8QFD|1|5|G|1328
8QFD|1|5|A|1329
8QFD|1|5|G|1330
8QFD|1|5|U|1331
8QFD|1|5|C|1332
*
8QFD|1|5|G|1508
8QFD|1|5|G|1509
8QFD|1|5|A|1510
8QFD|1|5|C|1511
*
8QFD|1|5|G|1650
8QFD|1|5|U|1651
8QFD|1|5|U|1652
8QFD|1|5|C|1653
*
8QFD|1|5|G|2280
8QFD|1|5|C|2281
8QFD|1|5|C|2282
*
8QFD|1|5|G|2337
8QFD|1|5|C|2338
8QFD|1|5|A|2339
8QFD|1|5|G|2340
8QFD|1|5|A|2341
8QFD|1|5|U|2342
8QFD|1|5|C|2343
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain N
- 60S ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain e
- 60S ribosomal protein L32
- Chain r
- 60S ribosomal protein L28
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